rs6316607 SNP Detail

Summary

• ID
  rs6316607
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39869217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTACAAAA GAAAATATAG
  AACCCGAAGT GGTTTAAACT TAAAATATTT ATTTAAGATT TTTTTGACAT TGTATAAAAA
  CAATAGGTTT TGGCTTACAC ACACTTTCAC ATGTAAAGAT CCCACCCCGC CCACGGCATA
  CGGGCTTCTC TGTGTGGCAC TGCCATCTAG TGGCTAACTA ACTAGTGGGT AGCCTGCTTT
  R
  CTTTGAGCGA ACAGTTATTG TTCCAGAAAT ATTTAATGAG CATCTGCTAT GTGCAGCATA
  CTTGTAACAA GCTCTGGGAG TCGTAAAATG ATGGAAACTT AATTTCTGAG TGCAAAATTT
  TATTTGTTCT TTCCTATAGA ATAAAAGCAG CATGGTAGAG AATCCCTTGC AACCTCCACT
  TGAAACTGTG TAAAATTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8722584	WI_WGS_3_39701994	WI	MOUSE	f	SNP							A	G
ss49588280	NES12875370	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A			A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6316607					SNP	A	A	A	A	A	A	A	G	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49588280	NES12875370	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39869217 () rs orientation: forward

Symbol	Name	Function Class
Rr575773	regulatory region 575773	within coordinates
Rr575774	regulatory region 575774	23 bp distal