rs6316510 SNP Detail

Summary

• ID
  rs6316510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39869157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTGCAGGAGA
  GAGTAGCAAG CCAGTGACCC AAGCCTAAGC AATAACCATT TTCTGCAATA TAATTATGCA
  ATTGTCAAAG TTGATTAAGA AGTCAAAACA AAACCTGACA AATTACAAAA GAAAATATAG
  AACCCGAAGT GGTTTAAACT TAAAATATTT ATTTAAGATT TTTTTGACAT TGTATAAAAA
  CAATAGGTTT TGGCTTACAC ACACTTTCAC ATGTAAAGAT CCCACCCCGC CCACGGCATA
  Y
  GGGCTTCTCT GTGTGGCACT GCCATCTAGT GGCTAACTAA CTAGTGGGTA GCCTGCTTTN
  CTTTGAGCGA ACAGTTATTG ttccagaaat atttaatgag catctgctat gtgcagcata
  cttgtaacaa gctctgggng tCGTAAAATG ATGGAAACTT AATTTCTGAG TGCAAAATTT
  TATTTGTTCT TTCCTATAGA ATAAAAGCAG CATGGTAGAG AATCCCTTGC AACCTCCACT
  TGAAACTGTG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8722487	WI_WGS_3_39701934	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6316510					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39869157 () rs orientation: forward

Symbol	Name	Function Class
Rr575773	regulatory region 575773	within coordinates
Rr575774	regulatory region 575774	16 bp proximal