rs6316436 SNP Detail

Summary

• ID
  rs6316436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146798839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCTAGA CATTCTTAAG
  ATGAAATTGT CAAATAAACC CAGTCTGGCT TTGTGTTGAA ATTCATCAAA AATGGCTTTG
  TTTGCCTCCC TTTCTGATTG CAACTGTCAA TCACTTGTCC TTAATTGAAT AATTTGCACG
  ATACCAAGAG CAGATTTTGT GAACAAAATG TCCAAAAAAA CATGCGGTAG AGCGAAGAAG
  Y
  AAAATCATAA GGGAAGGCGT TAGTGTACTG GAGCAAATCG CAGCCAAGCT TTCCCGATGG
  CCAGAAGCAC ACCAGGAGTA GCAATGACAC CTTTGCCATG TAAACCACAG GGGAAAGTAA
  TTAAATTTAA CAGAAGCTGC CCTTGATTTA AAGCCACAGG GGAAGTAATT AAATTTAATA
  GAAGCCACTA CTTCTAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8722413	WI_WGS_3_147628900	WI	MOUSE	f	SNP								C		T
ss61096399	NES16600899	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T		C	C	C	T		C	C	T	C
ss136047141	ENSMUSSNP3908379	ENSEMBL	ENSEMBL_Sanger	f	SNP		C									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6316436					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096399	NES16600899	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146798839 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Rr375880	regulatory region 375880	within coordinates
Rr587122	regulatory region 587122	537 bp distal
Rr587123	regulatory region 587123	within coordinates
Rr587124	regulatory region 587124	309 bp distal