rs6316295 SNP Detail

Summary

• ID
  rs6316295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146993691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAA AGGGAAAACC ACGGAGGCTG
  Y
  CAGACACTTG GTAAAGTTTA TGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8722271	WI_WGS_3_147824193	WI	MOUSE	f	SNP								T		C
ss45416419	mCV24739377	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T			C
ss51048942	NES13897453	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C		C	C	C		C	C	C	C		C
ss136048743	ENSMUSSNP4642595	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C								C
ss321011785	CHEV_3_146950900	CHEVERUD	SCREENING_POP	f	SNP														C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6316295					SNP	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51048942	NES13897453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146993691 () rs orientation: forward

Symbol	Name	Function Class
Rr587143	regulatory region 587143	within coordinates