rs6315970 SNP Detail

Summary

• ID
  rs6315970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146798762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAAATG GTTAGCTGGG
  GGTGTTTAAT CAAATGAAAG TCAAAAATGG TAGGGAACTG CATTTTTGTG TAGATTTTGA
  AGCTAGACAT TCTTAAGATG AAATTGTCAA ATAAACCCAG TCTGGCTTTG TGTTGAAATT
  CATCAAAAAT GGCTTTGTTT GCCTCCCTTT CTGATTGCAA CTGTCAATCA CTTGTCCTTA
  R
  TTGAATAATT TGCACGATAC CAAGAGCAGA TTTTGTGAAC AAAATGTCCA AAAAAACATG
  CGGTAGAGCG AAGAAGCAAA ATCATAAGGG AAGGCGTTAG TGTACTGGAG CAAATCGCAG
  CCAAGCTTTC CCGATGGCCA GAAGCACACC AGGAGTAGCA ATGACACCTT TGCCATGTAA
  ACCACAGGGG AAAGTAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8721945	WI_WGS_3_147628823	WI	MOUSE	f	SNP		A	G
ss136047138	ENSMUSSNP4718097	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6315970					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146798762 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Rr375880	regulatory region 375880	within coordinates
Rr587122	regulatory region 587122	460 bp distal
Rr587123	regulatory region 587123	within coordinates
Rr587124	regulatory region 587124	232 bp distal