rs6315957 SNP Detail

Summary

• ID
  rs6315957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146798753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATTAGCA AGGAAAATGG
  TTAGCTGGGG GTGTTTAATC AAATGAAAGT CAAAAATGGT AGGGAACTGC ATTTTTGTGT
  AGATTTTGAA GCTAGACATT CTTAAGATGA AATTGTCAAA TAAACCCAGT CTGGCTTTGT
  GTTGAAATTC ATCAAAAATG GCTTTGTTTG CCTCCCTTTC TGATTGCAAC TGTCAATCAC
  Y
  TGTCCTTAAT TGAATAATTT GCACGATACC AAGAGCAGAT TTTGTGAACA AAATGTCCAA
  AAAAACATGC GGTAGAGCGA AGAAGCAAAA TCATAAGGGA AGGCGTTAGT GTACTGGAGC
  AAATCGCAGC CAAGCTTTCC CGATGGCCAG AAGCACACCA GGAGTAGCAA TGACACCTTT
  GCCATGTAAA CCACAGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8721932	WI_WGS_3_147628814	WI	MOUSE	f	SNP	T	C
ss136047135	ENSMUSSNP5353593	ENSEMBL	ENSEMBL_Sanger	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6315957					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146798753 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Rr375880	regulatory region 375880	within coordinates
Rr587122	regulatory region 587122	451 bp distal
Rr587123	regulatory region 587123	within coordinates
Rr587124	regulatory region 587124	223 bp distal