rs6315947 SNP Detail

Summary

• ID
  rs6315947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94896996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGCATTC CCTCTGAGCT
  TTAGTGCCCT GACAGGCTCA GCTGATCCTT TGCTCACAGA CGGCAGCTGG AATGTTGTGC
  TGCTTAGTCC TAGCCCCTCG GTCTCTGGAG CAAACAGCTG GGAGAGGTAG AATTTACTCC
  TGGATTAGAG CCAAGGACTG CTTGGCAGAA ACCTCCAGTA TCCCATTTCT CCCACCAAGA
  R
  CCCTTTCCTT ATGGCTTCTG CCATCAGCCC ATCAAATATT TATTCAGTTT TCTAAATGTT
  AGACCCTGTG CTGGCTGAGC CAACTCCAAA AACAAACAGG AATTGGCCTG AGGGAAAGTT
  TTACCTTCCC ACAACTGGTT TTCCTTTTTT AACTTCCTTT CTTTCAGGTT TGAGTTCTTC
  CCATTCCCCA GTTCACTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8721922	WI_WGS_3_95273754	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6315947					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94896996 () rs orientation: forward

Symbol	Name	Function Class
Pi4kb	phosphatidylinositol 4-kinase beta	Intron
Rr580773	regulatory region 580773	1669 bp distal
Rr580774	regulatory region 580774	within coordinates