rs6315798 SNP Detail

Summary

• ID
  rs6315798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125701777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAATTTAG GCCCAATTGT TATCTATACA GATGAATTAA
  ACATGCCCAA ATTACCAAAG GTAAAAACAA AAAAACAAAA CCAAATCAAA CAAAATTACC
  Y
  GATTTTATCT TCATCATGCA CAGCTGATGT TGAGCACAGT TCAGCATTAA CATTCACACC
  TTCGGGTTGA ATCCTTACAG ACCCCGCTTG GCTGTGCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss8721772	WI_WGS_2_126841406	WI	MOUSE	f	SNP						T	C
ss37633387	NES09011435	PERLEGEN	MM_PANEL2	f	SNP	T			T	C				C	T
ss45323753	mCV23888340	ABI	CRAMUS_MOUSE	f	SNP	T	T	T			T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs6315798					SNP	T	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633387	NES09011435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125701777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cops2	COP9 signalosome subunit 2			775 bp upstream
Cpgi12203	CpG island 12203			461 bp distal
Galk2	galactokinase 2			Intron
				Noncoding-Transcript-Variant
Rr367292	regulatory region 367292			605 bp downstream
Rr564285	regulatory region 564285			1925 bp distal
Rr564286	regulatory region 564286			829 bp distal
Rr564287	regulatory region 564287			273 bp distal
Tssr19907	transcription start site region 19907			632 bp downstream
Tssr26026	transcription start site region 26026			830 bp upstream
Tssr26027	transcription start site region 26027			636 bp upstream