rs6315733 SNP Detail

Summary

• ID
  rs6315733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51635407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGTACAGTCT
  AAAATGTATA TGGCATTAAA ATACGCTGGG CCCACACCAG ACCTTTGGTC AGTTCTGGGG
  TCTAAAGAGG AAATGGAAGG TTAAGTGTGA AAAACTTGAG GGTAAGGGAA ATGACTTCAA
  TCTCTAAAGT AAAATTGCTT CATCTAACTG AAACAAACAA ACAAAAACTG TTCAGCATTA
  GCTAAAAACA AAAACAAAAC CCAAATCCTG TTGATGTGAC TGGGTGCTGG ACCAAGAGGG
  Y
  ATATTTAGTG TCCNACGCCG TAGGGCTGCA TCTTGAAGCC CAACAGGAAG TATCTGGAGT
  CACAGCTAAA GATATCTCTG CATGTTTGGA AATTTATGAG CAGCTGTAAA GTGGCTCGAT
  GGTGGGCAGA GGGCTGGAAC AGGCTTCCTT TCAAATGAGA GAGGCCGCTG AATTAAACAC
  TCAAATACAC CAGGTTCGTG GCAGGCGGAG CACACCTGAN ATGCTAAAAA TAGNCGCAGG
  AGAAGCTTCT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8721707	WI_WGS_3_52179137	WI	MOUSE	f	SNP							T		C
ss60412578	NES15913898	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6315733					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60412578	NES15913898	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51635407 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576380	regulatory region 576380	within coordinates