rs6315383 SNP Detail

Summary

• ID
  rs6315383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94896868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGCTGG GACTGGGTGG
  CAGGCTCCAC ACGTGGCCGC ATTTCCTCTC CGTCCCATGT CTTCTAAGAC CAATGAAGAC
  CCCTTTGACT CCCAGAGATT CGTATCTCCC TGCCAGGCTT TCAGACCTGG CGGCATTCCC
  TCTGAGCTTT AGTGCCCTGA CAGGCTCAGC TGATCCTTTG CTCACAGACG GCAGCTGGAA
  Y
  GTTGTGCTGC TTAGTCCTAG CCCCTCGGTC TCTGGAGCAA ACAGCTGGGA GAGGTAGAAT
  TTACTCCTGG ATTAGAGCCA AGGACTGCTT GGCAGAAACC TCCAGTATCC CATTTCTCCC
  ACCAAGAACC CTTTCCTTAT GGCTTCTGCC ATCAGCCCAT CAAATATTTA TTCAGTTTTC
  TAAATGTTAG ACCCTGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8721356	WI_WGS_3_95273626	WI	MOUSE	f	SNP							T		C
ss46771025	NES10635480	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6315383					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771025	NES10635480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94896868 () rs orientation: forward

Symbol	Name	Function Class
Pi4kb	phosphatidylinositol 4-kinase beta	Intron
Rr580773	regulatory region 580773	1541 bp distal
Rr580774	regulatory region 580774	within coordinates