rs6312536 SNP Detail

Summary

• ID
  rs6312536
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73112632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGATTT TCTCTATTAA
  GGGTAAGAAG AATGACATAT TTCATGTCTG GATTTGTGGA GTTTCCTTTG GATTCATTGA
  ATTTAGAGGA TTCCTCTTAG GCTACTTACT AGATCATGCC CAGTCCCATG CCTCAGTATC
  GCCAGCACAT GCAGACACAG TGAGCTTCGG GAAGGCTGTT GTTCCATGTT TGTGTGTGTG
  W
  GAATGCCTCC CCTTCCATCT GTAAGTCAGA ACAGGCCCAT TGCGGTTGTC TAGCATCTGT
  GGGTGGCCAA GGCCCAAACC TAAACTGCAG ATGCACATGA TCTGTAACCA CTGGGAAATT
  TCTCTTAGAA TTGGGTGGGT AAGATTAGCC CTTTTAAAAT TATTCCCTTA TGTTTTAATA
  TTCTCAACAG GAAGGATTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss8718500	WI_WGS_2_74117103	WI	MOUSE	f	SNP					A		T
ss38117466	NES09272562	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		T		A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs6312536					SNP	A	A	A	A	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117466	NES09272562	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73112632 () rs orientation: forward

Symbol	Name	Function Class
Cir1	corepressor interacting with RBPJ, 1	813 bp downstream
Cpgi11771	CpG island 11771	1034 bp distal
Rr559124	regulatory region 559124	276 bp distal
Rr559125	regulatory region 559125	327 bp distal