rs6312053 SNP Detail

Summary

• ID
  rs6312053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93884647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCCCGGAGCG
  GCTAAAGGCA CAGTGCCCCA CCGAACTCCC GACAAGGGCT GCAGGTCTGG GCATTGGGTA
  CCCGCACCAC CGGCAAACGT GCTCCGTACA CGTGCACCGT ACTACTGCAG GACCCAGAAA
  ATCCTGCAAG CGCAGAACCC AGCTCCAAAC TCAAAGCAAA CTCCAAACTT GAGCTCCAAA
  CTCAAGCGCG AAGCGTGAGC ACCTCCGTGC TCCCGCCTGG TGCGACTTCA CGCCACCTGG
  M
  GCACCGGttt tttccgtttt gttttttttt tttttttttt tttttAATTA AGGCGCGAAG
  GGCCGGGGTT TGTGAACCGC CCGAAGCCCC ACGACAGTCT ACAACTCCTC GAAGGCCTTC
  GAACTTCGGG TTTTCAAATG GGGACCCAGA AAAGACAGAA GAATCTGCTT CACGCGAGTG
  GTTAGGAGGC CCAGCTCCCC CGGCGCGGGT GGGGAAGTCT GCAGGACCAG GAGCTGGTCG
  GCCTGCAAGC                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8718014	WI_WGS_16_94810500	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6312053					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93884647 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	within coordinates
Gm31175	predicted gene, 31175	within coordinates
Gm49620	predicted gene, 49620	within coordinates
Gm60844	predicted gene, 60844	within coordinates
Rr520039	regulatory region 520039	1069 bp distal
Rr520040	regulatory region 520040	within coordinates
Rr520041	regulatory region 520041	68 bp proximal
Rr520042	regulatory region 520042	653 bp proximal
Rr520043	regulatory region 520043	1154 bp proximal
Rr520044	regulatory region 520044	1304 bp proximal
Sim2	single-minded family bHLH transcription factor 2	1316 bp upstream
Tssr139539	transcription start site region 139539	1129 bp upstream
Tssr139540	transcription start site region 139540	1438 bp upstream