rs6311588 SNP Detail

Summary

• ID
  rs6311588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95988214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGTAAT GAGGGGAAAA
  AAAAAGAAAA AGAAAGAAAG AAAGAAACCA AGAATATATT GTAATGCAAT TTTAAAAAGA
  TGAAATTTAA CTTCTGTCCC AATAAAAGTT ACTGTAGCAG AATAAGGCCC TCTCCTCATC
  TCACTGAACC ACTTATACAA AACTTTTCTT GTCAGGTATG GTAGTACATA CTTTGGATCC
  Y
  GACACGAGGA AGGCAGAGGC AGGTGGCTCT CCAGGAGTTT GAGGCCTGGC TGGTCTATAT
  AGGAAGTTAT TTCCAGGATA GCCAGGGATA CATAGTGAGA TCATCCTGTC TCAAAACACA
  ACAACAACAA CAACAACAAC AACAACAACA ACAACAACAT CCCAAACAAA CCAACCCAAA
  AAGCCCCAAA CAAATCACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8717547	WI_WGS_3_96374252	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6311588					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95988214 () rs orientation: forward

Symbol	Name	Function Class
Rr581136	regulatory region 581136	203 bp proximal
Rr581137	regulatory region 581137	290 bp proximal