rs6311480 SNP Detail

Summary

• ID
  rs6311480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97860600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAAACTC ACTGTATCAG
  GGTACTGTCT TGTTGAAGGC AAGTCAATGC TGGGAGCCAT TTAACTCCAT TTATCAATCA
  CATGACACTG GACTTGGTGA TATATTAAGA ACAAGATGCC CCCTCCTCCA CCCCTCAACT
  TCCCACTGTT TTGCTTCTTT CTCATTGTTG AAACCCAGAA TTCAAAACTG GTTTGGAGGC
  Y
  CTGTGTAGAA GTGCATTCCA GAGCATGCCA CTAAATGGGA TATAAATAGC ATTTGCCCTG
  ACAGAGCTGG AGTTTTCTCA GCTCTAGAGA CATTGAAGCC TTTGTTTTGT GGGTCACTGG
  CCCCTCCCCC TCAAGCCTGA GTCATAAAGC CCGAAACACT AATGAGGTTG CTGAAATGTA
  AAATCTAATT GGTAAGATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8717438	WI_WGS_6_98700559	WI	MOUSE	f	SNP							T		C
ss60915305	NES16222668	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6311480					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915305	NES16222668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97860600 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635234	regulatory region 635234	1223 bp distal
Rr635235	regulatory region 635235	within coordinates
Tssr57901	transcription start site region 57901	407 bp upstream