rs6311412 SNP Detail

Summary

• ID
  rs6311412
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154683614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         tgtgttgtgg
  tgcccagtac tggctgaggt gggagtgctg gtttctgata atggtgagtg atcttggttt
  ctgttagtaa gattcttatg tctgcctttc gccatctggt aatctctgga gtctgttgtt
  atagttgtct ctggttatag cttattcctt tcatgattct gttagcctct accagcagac
  ctgggagant agctctcccc tgagtttcag tggttagagc actctctgca ggcaagctct
  S
  atcttgcaga gaaggtgcac agatatctgg cgttcatact tgcctcctgg catgaagata
  aaggtctgaa acagggcctn tcgcagaagc tgttagcttc tggtgtccac actctcacct
  gtgcagacta gtcttggcgg gatccaggaa ccaagatgga tccctcaggt gctctggcaa
  agccctcccg ggcagggcgg acacctctcc tcttccaggg aaggtgcccg tatgtctgga
  gcccgaaaCG                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8717370	WI_WGS_3_155573395	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6311412					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154683614 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit219	DNA segment, Chr 3, Massachusetts Institute of Technology 219			1445 bp proximal
Rr587912	regulatory region 587912			1242 bp proximal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant