rs6311001 SNP Detail

Summary

• ID
  rs6311001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97860526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGGCTT TACCACAATT
  TTTTCTCTTT CATCCTAGGG TATTTTCCTA CCCTTTATTT TCTACTAATT TGAACTCCAA
  ACTCACTGTA TCAGGGTACT GTCTTGTTGA AGGCAAGTCA ATGCTGGGAG CCATTTAACT
  CCATTTATCA ATCACATGAC ACTGGACTTG GTGATATATT AAGAACAAGA TGCCCCCTCC
  Y
  CCACCCCTCA ACTTCCCACT GTTTTGCTTC TTTCTCATTG TTGAAACCCA GAATTCAAAA
  CTGGTTTGGA GGCTCTGTGT AGAAGTGCAT TCCAGAGCAT GCCACTAAAT GGGATATAAA
  TAGCATTTGC CCTGACAGAG CTGGAGTTTT CTCAGCTCTA GAGACATTGA AGCCTTTGTT
  TTGTGGGTCA CTGGCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8716957	WI_WGS_6_98700485	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6311001					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97860526 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635234	regulatory region 635234	1149 bp distal
Rr635235	regulatory region 635235	within coordinates
Tssr57901	transcription start site region 57901	481 bp upstream