rs6310595 SNP Detail

Summary

• ID
  rs6310595
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61534368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAACTGAGC ACTCTAAAAA
  TGTTTCCCTG GAACACTATA GGTTAGCATA GTCACTCATG GGCACGTTTT AATGTAAAAT
  AATAGAACAA CAACAAAAAA AACAAATAAA ACAAACCTTA ATTAAAAATA AACAAGTTGA
  TGGAGCAGAA TCATGAACAC AATACAGGAA AAGAAAGACT TTGCAGCAGA ACCTGGGATG
  W
  GTATGGGCTC AAGTGGATGC CCAAGTATTT TCTTTTCCTG AGCTCAAATG AAAACCCATA
  CACCATCTGG ATAACTTCTA TCCTTAAACC CGAAGCACAC GCTGTTTGTT CCAAATGTTG
  GGACTGCTAA TTTGATATTC ACATTTAGAG TATCACAATG GCCCTATTAC TTTTCATCAT
  TATAGGTTCA TTTCTTTAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8716550	WI_WGS_3_62208521	WI	MOUSE	f	SNP					A		T
ss46989880	NES10789707	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		A		A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6310595					SNP	A	A	A	A	A	A	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46989880	NES10789707	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61534368 () rs orientation: forward

Symbol	Name	Function Class
Rr577497	regulatory region 577497	1199 bp proximal