rs6309950 SNP Detail

Summary

• ID
  rs6309950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93884275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCCTCCA CTGCGAAAAT
  CCAGTCGCAA GAGTTCAGAT GCGCTTTCCT GTTACAAACT GGGAAATTCG TTGAGAAGTT
  TCAATTCTTG TTGCTTGCCG GGTTTCTCTC ACCTCCACTT AGCCATGTTT CTATGATCTG
  GGTAATCCCT TTCAAGCCGG GGAGGAATTC TCGGGAGTCC ATAATTGAGG GTCGGGAATC
  Y
  GGGGCGTGGG AGAAGCGTTA AACCCTATGT ATCTGCAGAG TGCAGGGCTC ATTCCTCGGA
  GGTCTGCGAA GCGGCGCCAG AGTGGGTCCG CCGTAGCAGG GTGGCTCCGC AGCCCTTACT
  TGCCCGGAGC GGCTAAAGGC ACAGTGCCCC ACCGAACTCC CGACAAGGGC TGCAGGTCTG
  GGCATTGGGT ACCCGCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8715901	WI_WGS_16_94810128	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6309950					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93884275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	within coordinates
Gm31175	predicted gene, 31175	within coordinates
Gm49620	predicted gene, 49620	within coordinates
Gm60844	predicted gene, 60844	within coordinates
Rr520039	regulatory region 520039	697 bp distal
Rr520040	regulatory region 520040	within coordinates
Rr520041	regulatory region 520041	440 bp proximal
Rr520042	regulatory region 520042	1025 bp proximal
Rr520043	regulatory region 520043	1526 bp proximal
Rr520044	regulatory region 520044	1676 bp proximal
Sim2	single-minded family bHLH transcription factor 2	1688 bp upstream
Tssr139539	transcription start site region 139539	1501 bp upstream
Tssr139540	transcription start site region 139540	1810 bp upstream