rs6309794 SNP Detail

Summary

• ID
  rs6309794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97860249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGGATGTGAT
  AGAACTGGCA CAAGAGAAAA TTAATTTGGT TGGGATCCAT GAATGGAGCG GGGGGTAATG
  GGCAAGCCTT GTGGAGGCTG TGTAATCCAT CACTGTACAA GGTTTGCTAG GTTGCCGAGC
  TGCGTGGCAC CTTCTGTTTC GGGCAGCATC GTGCCAAGAT TAACTCCTGT AGAACCCTGC
  TCTTCTGTAT TAGGAGAAAG CATACGCATA ATAGAATGTG ACTATAGAAC ATGTATATTC
  R
  CAGTCAATAA AAATGCTTCT ATCTGTCCTT CTGTATGTAT GGTGTGTGTG TCCATTGTGT
  GCTCTGAAAT AAAATCAAAT GGGCTTTACC ACAATTTTTT CTCTTTCATC CTAGGGTATT
  TTCCTACCCT TTATTTTCTA CTAATTTGAA CTCCAAACTC ACTGTATCAG GGTACTGTCT
  TGTTGAAGGC AAGTCAATGC TGGGAGCCAT TTAACTCCAT TTATCAATCA CATGACACTG
  GACTTGGTGA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8715745	WI_WGS_6_98700208	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6309794					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97860249 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635234	regulatory region 635234	872 bp distal
Rr635235	regulatory region 635235	138 bp proximal
Tssr57901	transcription start site region 57901	758 bp upstream