rs6308888 SNP Detail

Summary

• ID
  rs6308888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58278806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCCGTG ATTTGCTGAA
  CTGAATTGCG TTGTACAGCT GTAAGCCGCA GTCAGAACAT GTAAACAGTG CTGATGGCTG
  ATGGAGTAAG TTGAGAAAAA AACAAAACAA AAAACTAGAA GTAAAGCCTA TTGTGGGGTG
  TTCCTTTTCA AGATGATGTA GCACAGGCTT TTATCATTGT TTTCCTCAGG GGTTTTAAGA
  Y
  TCAGCTACTT TTGTTTTGAG ACGAGGTCTT ACTATACTGA CCAGACTGAT CTTGAACTCA
  TAAGCTCAAA AAGAAATCCT CCTGCTTCCA CCTTCTAAGT ATCTAGGACT TCAACCACTA
  TCTCCTGCCT CATGTGTGAT CCTTTAAGGG ATGCATATCT TGAGTGTGGA GGACTCCAGC
  TAAGGAGGAG CAGGAGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss8714838	WI_WGS_4_57195339	WI	MOUSE	f	SNP	C			T
ss45718463	mCV22957555	ABI	CRAMUS_MOUSE	f	SNP		C	T	T
ss321137468	CHEV_4_58291678	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs6308888					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58278806 () rs orientation: forward

Symbol	Name	Function Class
Rr592884	regulatory region 592884	67 bp distal