rs6308410 SNP Detail

Summary

• ID
  rs6308410
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130660471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccaggcta gcctatccta cctggaaaga
  cctgactcaa aaaaaaaaaa aaaaaaaaaa aaaaaaCCAA CAACAAAATC CACCTTTTCC
  TAGAATTTGG AAATTTCCAT CTCTAGAGCA CTAAGATGAA GTAGTGATTT TGAAAGGGAT
  K
  GAGTGACTGG ATAATTGGAG CACAGGGAGT CAAATGGAGG GGAGGGTCAT GTGAGTGAGC
  CAGGTACCTT AGTTTTCCAT TCCATTTGTA AAAGGAAATT CTCCATGGCT CAGTGTCTAT
  CTTTATTTAA ATAAGGGGTG CAGTGTGTGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8714358	WI_WGS_1_131563534	WI	MOUSE	f	SNP	G	T
ss319973023	CHEV_1_132629311	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6308410					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130660471 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Gm70818	predicted gene, 70818			1859 bp downstream
Rr417949	regulatory region 417949			748 bp distal
Rr417950	regulatory region 417950			114 bp distal
Rr417951	regulatory region 417951			within coordinates
Rr417952	regulatory region 417952			1085 bp proximal
Tssr8565	transcription start site region 8565			743 bp downstream
Tssr8566	transcription start site region 8566			682 bp downstream
Tssr8567	transcription start site region 8567			633 bp downstream
Tssr8568	transcription start site region 8568			599 bp downstream
Tssr13523	transcription start site region 13523			112 bp upstream
Tssr13524	transcription start site region 13524			1116 bp downstream