rs6306340 SNP Detail

Summary

• ID
  rs6306340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70689185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGGAAG GGAAGCTTGA
  AGCTCGGCGT TCTTGGCAAT CATGGCGGGA ATCAGAGCGC AGCCCATTTT CTGCCCGCCC
  CCCCCCCCCC CCCCCCCCGA TCTAACTCAG CCCTTTCCTG AATCCATTCA AAATGCAGAG
  TGTCGGAGGC TGACAAGCTG GAGTCAGCCT CCAGTCTTCC CCGAGATGCA TTTTCATATA
  R
  CTGCTGACAG GAGAGCTGGA ACCAGCGAAA TTCTTCCGTG CCTTGACATC GAAGACACGA
  AACCCTCTTC CCAACCAGAT CATGTCAGAC TCGGGGAGAA CACACTTCCG TATAATGAAT
  AATGCAGCAG GAGACAGTTC TCAACCTAAA TAGTTCCCAT TTCCCAACGG CCTGTAATGA
  AATCCATCTT TGTCTCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8712284	WI_WGS_2_71644606	WI	MOUSE	f	SNP							G		A
ss38125679	NES09283201	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6306340					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125679	NES09283201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70689185 () rs orientation: forward

Symbol	Name	Function Class
Gm13633	predicted gene 13633	1191 bp downstream
Gm75544	predicted gene, 75544	within coordinates
Rr558618	regulatory region 558618	1088 bp proximal
Rr558619	regulatory region 558619	1311 bp proximal