rs6305407 SNP Detail

Summary

• ID
  rs6305407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151909685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGGCTCT GCATGTGTGC
  ATCTTCAAAT GACCCCAAAT CATCTAGAAA ATTGATCTGG GGATGAAAAT AAATTTGTGA
  AGTAGGCACA TTCATAAATA CAGAATTGGC AAGAAATGGG GATTAACTGT ATAATGATGT
  GCCACTAAAT AACTATGGTC ACAAAAAAGA AGAGAAAAGA AAAGGAGAGG AGAAGAGAGG
  R
  GAGGAAAGGA AAGAGGCTCG AGAGCAACAC CTGCACCAAT GGTATGCCTT TGATGTATCT
  GTTATGTATA ACGAACTGAA CTGTATCTTT CACTCCAGAA ACTCTCCACA TAGCTTAAGC
  TCCCCTTTGA GCCCCAGCCT CTGAGAGCTG TGCTGCTGTG GACCCTGGCT GAGGTTGGGC
  TCCTCCTACT CCACACTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8711346	WI_WGS_3_152793455	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6305407					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151909685 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			within coordinates
Rr587489	regulatory region 587489			10 bp proximal
Rr587490	regulatory region 587490			438 bp proximal