rs6305389 SNP Detail

Summary

• ID
  rs6305389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151909678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCAGTG CGGCTCTGCA
  TGTGTGCATC TTCAAATGAC CCCAAATCAT CTAGAAAATT GATCTGGGGA TGAAAATAAA
  TTTGTGAAGT AGGCACATTC ATAAATACAG AATTGGCAAG AAATGGGGAT TAACTGTATA
  ATGATGTGCC ACTAAATAAC TATGGTCACA AAAAAGAAGA GAAAAGAAAA GGAGAGGAGA
  R
  GAGAGGGGAG GAAAGGAAAG AGGCTCGAGA GCAACACCTG CACCAATGGT ATGCCTTTGA
  TGTATCTGTT ATGTATAACG AACTGAACTG TATCTTTCAC TCCAGAAACT CTCCACATAG
  CTTAAGCTCC CCTTTGAGCC CCAGCCTCTG AGAGCTGTGC TGCTGTGGAC CCTGGCTGAG
  GTTGGGCTCC TCCTACTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8711328	WI_WGS_3_152793448	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6305389					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151909678 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			within coordinates
Rr587489	regulatory region 587489			17 bp proximal
Rr587490	regulatory region 587490			445 bp proximal