rs6305006 SNP Detail

Summary

• ID
  rs6305006
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66847726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTTCTG TGCCTTAGCT
  ATTTTTTTAT TCCTGCCTTT CCTAAAATAC AGCTTCTTCC TATTTTTCTA CCATTTATCC
  CTAAGACTTT CATCTCAGTT TTCCTCTCTT ACTGTACCTC ATCGCCTATT ATATCCTAAA
  ATAATTCCAC AAGACTGGGT TCTTTTGTTT CTTTTTTTTT CTTACCGTAC TTTTTCTTTA
  S
  CTATCATTAT TTCTGTTCAT TCTGTTTGTT TTCTGCTATC CATGTCATAT TATCTTTTTA
  AAAACTCATA ATTTCTCCTG CCAATAAACT AACATAACAT ATATACATAG TGGGCACCTA
  AAATCTCTTT AAAGGACAAA GTCAATTTGC CAAGAAAAAA AATAGTGATA TTTAACACCA
  TGTCAATATG ACAAAAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8710941	WI_WGS_3_67542986	WI	MOUSE	f	SNP							C		G
ss50972592	NES13935060	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6305006					SNP	C	C	C	C	C	C	C	C	G	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50972592	NES13935060	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66847726 () rs orientation: forward

Symbol	Name	Function Class
Rr61	regulatory region 61	276 bp distal
Rr366707	regulatory region 366707	307 bp downstream
Rr577871	regulatory region 577871	349 bp distal