rs6304814 SNP Detail

Summary

• ID
  rs6304814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151909560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AAGAGGCCTT
  ATCTCAAAAT GCAAaaagaa aaaagaaaag aaagaatgaa aaggaaanga gagaaagaag
  aggaagaaCC CCGTTTTAAC CTCTGGCATA TGTGCAGACT CAGAAATTAN TAAGTGAATA
  CATTTTTAAA AGAATGAAAA GTCCTACTAG TCCAACTTGA AGCCAGTGCG GCTCTGCATG
  TGTGCATCTT CAAATGACCC CAAATCATCT AGAAAATTGA TCTGGGGATG AAAATAAANT
  Y
  GTGAAGTAGG CACATTCATA AATACAGAAT TGGCAAGAAA TGGGGATTAA CTGTATAATG
  ATGTGCCACT AAATAACTAT GGTCACAAAA Aagaagagaa aagaaaagga gaggaganga
  gaggngagga aaggaaagAG GCTCGAGAGC AACACCTGCA CCAATGGTAT GCCTTTGATG
  TATCTGTTAT GTATAACGAA CTGAACTGTA TCTTTCACTC CAGAAACTCT CCACATAGCT
  TAAGCTCCCC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8710748	WI_WGS_3_152793330	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6304814					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151909560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			93 bp upstream
Rr587488	regulatory region 587488			1964 bp distal
Rr587489	regulatory region 587489			135 bp proximal
Rr587490	regulatory region 587490			563 bp proximal