rs6304799 SNP Detail

Summary

• ID
  rs6304799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151909558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGAAAC GAGAGAAAGA
  AGAGGAAGAA CCCCGTTTTA ACCTCTGGCA TATGTGCAGA CTCAGAAATT AATAAGTGAA
  TACATTTTTA AAAGAATGAA AAGTCCTACT AGTCCAACTT GAAGCCAGTG CGGCTCTGCA
  TGTGTGCATC TTCAAATGAC CCCAAATCAT CTAGAAAATT GATCTGGGGA TGAAAATAAA
  Y
  TTGTGAAGTA GGCACATTCA TAAATACAGA ATTGGCAAGA AATGGGGATT AACTGTATAA
  TGATGTGCCA CTAAATAACT ATGGTCACAA AAAAGAAGAG AAAAGAAAAG GAGAGGAGAA
  GAGAGGGGAG GAAAGGAAAG AGGCTCGAGA GCAACACCTG CACCAATGGT ATGCCTTTGA
  TGTATCTGTT ATGTATAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8710733	WI_WGS_3_152793328	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6304799					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151909558 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			95 bp upstream
Rr587488	regulatory region 587488			1962 bp distal
Rr587489	regulatory region 587489			137 bp proximal
Rr587490	regulatory region 587490			565 bp proximal