rs6304119 SNP Detail

Summary

• ID
  rs6304119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83459381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGAGCCA CTCTACTTAT
  AAAGTGGTAA GCAATTTGAA ACATCTCTAG ATCAAGCACT CACTCTGGAG TAGATGAAAC
  ATCTGCATAA GTCAAATGAA ATGAATCAAA TGAAACCTGA GTCTTGACAT GAAGGCCCCT
  CTCCCTGCCC CTTTGCAGAG CTTCACTCTG CCTCCACCTG CAGGTCTGAG GGTCTCTGCC
  Y
  CTGAGAACTG TGATTCCTTG CCACAGCACA TAAGGCCACA GTACTTGTCC TCAACTTCCT
  TAGTCCCTCC CTTGCTCATG GCTTTGGCCA GATTTGGCCT CCTTCCTGTG GGACAAGCCA
  AGCCCCTTCA CACTTCAAAA CCTCTGCTCC AAATGTTTGT TTTGCCTGAA TTGCCCTTGT
  TCCTCTTTCT GCCTGGTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8710052	WI_WGS_6_84371353	WI	MOUSE	f	SNP							C		T
ss51354739	NES13746637	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6304119					SNP	C	C	C	C	C	C	C	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354739	NES13746637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83459381 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dguok	deoxyguanosine kinase			Intron
				Noncoding-Transcript-Variant
Rr632876	regulatory region 632876			12 bp distal
Rr632877	regulatory region 632877			within coordinates