rs6303859 SNP Detail

Summary

• ID
  rs6303859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151909429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CGAAGGCGCA
  GAAATGGACC TACACCCAAA CCCCCCACTC ACACAGAAGC GGCCAGGCTG TGCACATGTG
  CAATGGCAGA TTCTGCATGC TGCTCATGGC AGGCTGAGAG GCTTCAAGCT CCAGCTTCAG
  GAAGAGGCCT TATCTCAAAA TGCAAaaaga aaaaagaaaa gaaagaatga aaaggaaang
  agagaaagaa gaggaagaaC CCCGTTTTAA CCTCTGGCAT ATGTGCAGAC TCAGAAATTA
  R
  TAAGTGAATA CATTTTTAAA AGAATGAAAA GTCCTACTAG TCCAACTTGA AGCCAGTGCG
  GCTCTGCATG TGTGCATCTT CAAATGACCC CAAATCATCT AGAAAATTGA TCTGGGGATG
  AAAATAAANT NGTGAAGTAG GCACATTCAT AAATACAGAA TTGGCAAGAA ATGGGGATTA
  ACTGTATAAT GATGTGCCAC TAAATAACTA TGGTCACAAA AAAGAAGAGA AAAGAAAAGG
  AGAGGAGANG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8709792	WI_WGS_3_152793199	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6303859					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151909429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			224 bp upstream
Rr587488	regulatory region 587488			1833 bp distal
Rr587489	regulatory region 587489			266 bp proximal
Rr587490	regulatory region 587490			694 bp proximal