rs6300341 SNP Detail

Summary

• ID
  rs6300341
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151278384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTTCCC CTAGGATGTA
  GAAATGGTTG TGCAACTGTG TGCAATCTCC CCATTTTCCT GTAAGTAACC CCAATTAAGC
  CTGTTGGTTC ACCAAGCTAG ACAGAGATGG TCTGTTGTTG GTGTCATCTC TGGGGTGAAC
  AGATGTTTGT TCATCTTCCC CCCCCCCCAA ATCAGCAACA GAGTAATGTT TACCAGTGGG
  M
  GCCCAATGTT GTGAGTGCAC CCAACACACC CTCCCAGAAG CTGGTCAACA GGGCAGGAGA
  GGACTGCTCT CAGATGCTCA GCCTTTCCCA CGAGAGCCTG CCCATAGGTC ACTGTACTGA
  ACTGTGTGTG AGAATAGGGG TTGGGGAGTG TGGTTAAGGA ATGTTCTGGA GTTTGCCAGC
  AGGTGGTGGT GGCTAGCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8706262	WI_WGS_4_146590322	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6300341					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151278384 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605535	regulatory region 605535	162 bp proximal
Rr605536	regulatory region 605536	172 bp proximal