rs6300039 SNP Detail

Summary

• ID
  rs6300039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109266151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG TTCCAGGACA GCCAGGGCTA
  Y
  ACAGAGAAAC TCTGTTTCAA AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8705957	WI_WGS_4_107160376	WI	MOUSE	f	SNP			C	T
ss147197629	ENSMUSSNP2600847	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6300039					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109266151 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14573	CpG island 14573			1052 bp distal
Rr597313	regulatory region 597313			1834 bp distal
Rr597314	regulatory region 597314			546 bp distal
Rr597315	regulatory region 597315			1534 bp proximal
Tssr38346	transcription start site region 38346			1835 bp downstream
Tssr38347	transcription start site region 38347			1789 bp downstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant