rs6299900 SNP Detail

Summary

• ID
  rs6299900
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151278351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACACCATGGC
  ACGCTCACCG NNAGCTTAGA ACACCTGTCA TCACTCCCAG GAGACCCTCA CAGCCTTGCG
  GTCTCTGGCT CACAAGTCTT CCCCTAGGAT GTAGAAATGG ttgtgcaact gtgngcaatc
  tccccatttt cctgtaagta accccaatta agcctgttgg tncaccaagc tagacagaga
  tggtctgttg ttggtgtcat ctctggggtg aacagatgtt tgttcatctt cccCCCCCCC
  M
  AAATCAGCAA CAGAGTAATG TTTACCAGTG GGNGCCCAAN GTTGTGAGTG CACCCAACAC
  ACCCTCCCAG AAGCTGGTCA ACAGGGCAGN AGAGGNCTGC TCTCAGATGC TCAGCCTTTC
  CCACGAGAGC CTGCCCATAG GTCACTGTAC TGAACTGTGT GTGAGAATAG GGGTTGGGGA
  GTGTGGTTAA GGAATGTTCT GGAGTTTGCC AGCAGGTGGT GGTGGCTAGC CCCTGTGGCA
  ATCAGTTTGG                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8705817	WI_WGS_4_146590289	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6299900					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151278351 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605535	regulatory region 605535	195 bp proximal
Rr605536	regulatory region 605536	205 bp proximal