rs6299780 SNP Detail

Summary

• ID
  rs6299780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151278272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGTTGT GGAGGTCTGT
  TCTGCGGCCA CACCATGGCA CGCTCACCGA GAGCTTAGAA CACCTGTCAT CACTCCCAGG
  AGACCCTCAC AGCCTTGCGG TCTCTGGCTC ACAAGTCTTC CCCTAGGATG TAGAAATGGT
  TGTGCAACTG TGTGCAATCT CCCCATTTTC CTGTAAGTAA CCCCAATTAA GCCTGTTGGT
  Y
  CACCAAGCTA GACAGAGATG GTCTGTTGTT GGTGTCATCT CTGGGGTGAA CAGATGTTTG
  TTCATCTTCC CCCCCCCCCA AATCAGCAAC AGAGTAATGT TTACCAGTGG GCGCCCAATG
  TTGTGAGTGC ACCCAACACA CCCTCCCAGA AGCTGGTCAA CAGGGCAGGA GAGGACTGCT
  CTCAGATGCT CAGCCTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8705697	WI_WGS_4_146590210	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6299780					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151278272 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605535	regulatory region 605535	274 bp proximal
Rr605536	regulatory region 605536	284 bp proximal