rs6299332 SNP Detail

Summary

• ID
  rs6299332
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151278224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTGTCC CAGCCTCTGC
  TCAGCACACT CCATACACTA TTGTCCTTGG GCTGTTGTGG AGGTCTGTTC TGCGGCCACA
  CCATGGCACG CTCACCGAGA GCTTAGAACA CCTGTCATCA CTCCCAGGAG ACCCTCACAG
  CCTTGCGGTC TCTGGCTCAC AAGTCTTCCC CTAGGATGTA GAAATGGTTG TGCAACTGTG
  K
  GCAATCTCCC CATTTTCCTG TAAGTAACCC CAATTAAGCC TGTTGGTTCA CCAAGCTAGA
  CAGAGATGGT CTGTTGTTGG TGTCATCTCT GGGGTGAACA GATGTTTGTT CATCTTCCCC
  CCCCCCCAAA TCAGCAACAG AGTAATGTTT ACCAGTGGGC GCCCAATGTT GTGAGTGCAC
  CCAACACACC CTCCCAGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8705249	WI_WGS_4_146590162	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6299332					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151278224 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605535	regulatory region 605535	322 bp proximal
Rr605536	regulatory region 605536	332 bp proximal