rs6298743 SNP Detail

Summary

• ID
  rs6298743
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151278121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCACCA CCACAGGTCA
  CTCAGACAAG GACCCCCATG AGACTCCCTT CTCAGGTGAT CCGGGACCTG CCAAGCTGAT
  GATTGAAAAT TACCCTCACC CCTGGCTTTG TCCCAGCCTC TGCTCAGCAC ACTCCATACA
  CTATTGTCCT TGGGCTGTTG TGGAGGTCTG TTCTGCGGCC ACACCATGGC ACGCTCACCG
  M
  GAGCTTAGAA CACCTGTCAT CACTCCCAGG AGACCCTCAC AGCCTTGCGG TCTCTGGCTC
  ACAAGTCTTC CCCTAGGATG TAGAAATGGT TGTGCAACTG TGTGCAATCT CCCCATTTTC
  CTGTAAGTAA CCCCAATTAA GCCTGTTGGT TCACCAAGCT AGACAGAGAT GGTCTGTTGT
  TGGTGTCATC TCTGGGGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8704655	WI_WGS_4_146590059	WI	MOUSE	f	SNP							A		C
ss46724493	NES11002380	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		C		A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6298743					SNP	A	A	A	A	A	A	A	C	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46724493	NES11002380	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151278121 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605535	regulatory region 605535	425 bp proximal
Rr605536	regulatory region 605536	435 bp proximal