rs6293790 SNP Detail

Summary

• ID
  rs6293790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:124772009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAATTTT ACAAGTAGTT
  ACCAGCTTTA TACGCATACA CAGGGGCAAG GGTTCAGAGA GACGGAGACA AACTAAAGAG
  CTGAGGTGGT GAGGGTCTCC CAGGCACTCG GCTAGACCAC TACATGTGGA TTGGTAGATT
  AATCACTCTT CAAATTTCTT TCATCTTTGG AGCATTTGCT TCGGAACTCT AAAGTGTATG
  Y
  ATATATAAAC CCCATTGAAC CAAAATTTTA AATACTCTTT TTAAAAGAAA CAAGAAAAGA
  AGTCAGATTT TCAATGTAGT TGGTGCTAGA AAAGAAACTT CAATATGAGA AGCCATGCTG
  AGAACTGTGA TGTTAAATGC TGTCACAACA ATGAGTGACA TTGAGGATTA GAGTTGTTTT
  CCAAGAGGCC AAAGAGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8699685	WI_WGS_2_125916187	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6293790					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:124772009 () rs orientation: forward

Symbol	Name	Function Class
Rr564149	regulatory region 564149	1307 bp distal
Rr564150	regulatory region 564150	1407 bp distal