rs6292520 SNP Detail

Summary

• ID
  rs6292520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89207706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATTCTTTTGG
  AGTTCTGTTG ACTTCTGCCA GGCAACCCCT CCCTACTCta agcccttatt atggttaata
  agttctcaca ttaaacttcn cctgctcaaa gtactgtgtg gtttctatct cctgattggC
  TAGCTGGTGT AGCAGCCCAC ACTCCAGGAT GATATTGCCT CTTTAGATTA GCCCTAGGTC
  AAAGACTGCT CTGCTTTTGC CAAATATCAC TTAGCAGTGA ACCTTTGAAG GGTCAATCCa
  Y
  ctggatgttg tggcaaacac ctgggaaagt gcaattagag tgatcacaag ttcaaggtca
  gcctcacagc ctgttcaagg ctcacatgag accctgCAAT CCCCCAAAGG CAAACCATTT
  GTCTCTCTGT CCTGAAAAAC TCATGTAAGT TTCTGAGGAA GGCTTAAAAG TATTGAAAGA
  AATGTTTTAA AAAGTCTTCT ATTAgggctg gagagatggc tcagcggtta agagcactgt
  ctgctcttcc                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8698415	WI_WGS_3_90133832	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6292520					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89207706 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13418	CpG island 13418	407 bp distal
Gm33845	predicted gene, 33845	within coordinates
Gm65883	predicted gene, 65883	within coordinates
Rr580029	regulatory region 580029	within coordinates
Rr580030	regulatory region 580030	312 bp proximal