rs6291574 SNP Detail

Summary

• ID
  rs6291574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132243295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTGGTA GCACAAGGCT
  TACTTTTTTT TTTTTTTTTC TTAATATTTG AGACTAGGTC TGTACACCAG GCCCATAACT
  CAAATCCGGA ACTCAAACTT GTTATGTATC CAGAGGCTGA TCTTAACTTT ATGATGGCCC
  TGCCACAACT TCCCAAGTAT CTGGGATTGC AAGTCTGTGT TGCCTCCCCT GGTGTTTTAA
  R
  TCTCTACACA TTCTTTCGCA TGTGGGGATG TAGCTCAGTG GTAGAGCGCA TGCTTAGCAT
  GCATGAGGTC CTGGGTTCGA TCTCCAGGTT TTTTTTTTTT AAATCCATTT ACACACTTAA
  GTGCTTCTAT GTGTTACATT TTTAATATTA AAGAGGCCCT TGCCGGGCGT GGTGGCGCAC
  GCCTTTAATC CCAGCACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8697466	WI_WGS_4_130079633	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6291574					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132243295 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	24 bp upstream
Rr377207	regulatory region 377207	within coordinates
Rr600995	regulatory region 600995	1195 bp distal
Rr600996	regulatory region 600996	694 bp distal
Rr600997	regulatory region 600997	1033 bp distal
Rr600998	regulatory region 600998	within coordinates
Rr600999	regulatory region 600999	1790 bp proximal
Tssr39372	transcription start site region 39372	156 bp downstream
Tssr43681	transcription start site region 43681	550 bp upstream