rs6291516 SNP Detail

Summary

• ID
  rs6291516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89207545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGAGACT TACTATGTTG
  CCCAGGTGGG CCCTGATCTC CTGGAATTAA GCAATCCTCC TGCCTCAGCT TCTAGAGTTC
  CTGAACTATA AGTGTGCTTG ACAATTCCCG TATTCTTTTG GAGTTCTGTT GACTTCTGCC
  AGGCAACCCC TCCCTACTCT AAGCCCTTAT TATGGTTAAT AAGTTCTCAC ATTAAACTTC
  Y
  CCTGCTCAAA GTACTGTGTG GTTTCTATCT CCTGATTGGC TAGCTGGTGT AGCAGCCCAC
  ACTCCAGGAT GATATTGCCT CTTTAGATTA GCCCTAGGTC AAAGACTGCT CTGCTTTTGC
  CAAATATCAC TTAGCAGTGA ACCTTTGAAG GGTCAATCCA CCTGGATGTT GTGGCAAACA
  CCTGGGAAAG TGCAATTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8697408	WI_WGS_3_90133671	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6291516					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89207545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13418	CpG island 13418	246 bp distal
Gm33845	predicted gene, 33845	within coordinates
Gm65883	predicted gene, 65883	within coordinates
Rr580029	regulatory region 580029	within coordinates
Rr580030	regulatory region 580030	473 bp proximal