rs6291138 SNP Detail

Summary

• ID
  rs6291138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132243231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG CTGATCTTAA CTTTATGATG
  R
  CCCTGCCACA ACTTCCCAAG TATCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8697030	WI_WGS_4_130079569	WI	MOUSE	f	SNP						G	A
ss37758820	NES09152538	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G			G	G	A	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6291138					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758820	NES09152538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132243231 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	88 bp upstream
Rr377207	regulatory region 377207	within coordinates
Rr600995	regulatory region 600995	1131 bp distal
Rr600996	regulatory region 600996	630 bp distal
Rr600997	regulatory region 600997	969 bp distal
Rr600998	regulatory region 600998	within coordinates
Rr600999	regulatory region 600999	1854 bp proximal
Tssr39372	transcription start site region 39372	92 bp downstream
Tssr43681	transcription start site region 43681	486 bp upstream