rs6291006 SNP Detail

Summary

• ID
  rs6291006
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89207453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGGAGA AGTGGCTGCC
  GTTATACCCG CCATTCCCCG TGCTCTCCTT GAAAAAATTA TTATCATTAT TTTTATTATT
  ATTATTTTAG ACTATGGAGA CTTACTATGT TGCCCAGGTG GGCCCTGATC TCCTGGAATT
  AAGCAATCCT CCTGCCTCAG CTTCTAGAGT TCCTGAACTA TAAGTGTGCT TGACAATTCC
  S
  GTATTCTTTT GGAGTTCTGT TGACTTCTGC CAGGCAACCC CTCCCTACTC TAAGCCCTTA
  TTATGGTTAA TAAGTTCTCA CATTAAACTT CTCCTGCTCA AAGTACTGTG TGGTTTCTAT
  CTCCTGATTG GCTAGCTGGT GTAGCAGCCC ACACTCCAGG ATGATATTGC CTCTTTAGAT
  TAGCCCTAGG TCAAAGACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8696898	WI_WGS_3_90133579	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6291006					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89207453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13418	CpG island 13418	154 bp distal
Gm33845	predicted gene, 33845	within coordinates
Gm65883	predicted gene, 65883	within coordinates
Rr580029	regulatory region 580029	within coordinates
Rr580030	regulatory region 580030	565 bp proximal