rs6290923 SNP Detail

Summary

• ID
  rs6290923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155688997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGAATGTAGT
  TTATAATTTG AGAGGGGCAC GGTGACTTAA TACCTTTACG GTAGAGTGGC TGTTCTACAC
  CACAAGTTCA GGGTCAGCAG CTGTAACCAG CTTCAGGCCA ATGTGGGTTA AATAACCTAC
  AAGttctttt tttgtttgtt tgnttggttg gttggttggt tggtttttcg agacagggtt
  tctctgtgna gcnctggctg tcctggaact cantttgtag accaggctgg cctngaactc
  R
  gaaatccgcc tgcctctgcc tcccgagtgc tgggattaaa ggcgtgtgcc accanacccg
  gcTCACCTAC AAGTTCTTAA ATGCAGGCAG CTTGTTGCTG CTGGTGGTCT TCAGCTTCTT
  GCAGGCTAAG ACCTTCTTTT CTTTGTAATT GATGCAAATT GTGGTCAGGG AATTGGACCA
  GGACTGGGTG GGTGAGTCAG ACTCTGCCAG CATTAGAGCT GAGTAGCCCT TGGTTCATCT
  ATAAAGCCAA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8696815	WI_WGS_4_151056105	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6290923					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155688997 () rs orientation: forward

Symbol	Name	Function Class
Rr606519	regulatory region 606519	1412 bp distal
Rr606520	regulatory region 606520	477 bp distal
Slc35e2	solute carrier family 35, member E2	Intron