rs6290620 SNP Detail

Summary

• ID
  rs6290620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132243159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGACAAGG CAACTCTCCG
  AAGCTGTTGA GGAGACCTGA AAGGTCTTTA AAATCTTCTT GCTCTGCCTA TCAACCGGGC
  TCTGATTGGT CTAAAACTCA GCGCCTGCCT CTCCTCCGCC CGCCCTGAGC AGGAAGGGAG
  CTGGTAGCAC AAGGCTTACT TTTTTTTTTT TTTTTCTTAA TATTTGAGAC TAGGTCTGTA
  Y
  ACCAGGCCCA TAACTCAAAT CCGGAACTCA AACTTGTTAT GTATCCAGAG GCTGATCTTA
  ACTTTATGAT GGCCCTGCCA CAACTTCCCA AGTATCTGGG ATTGCAAGTC TGTGTTGCCT
  CCCCTGGTGT TTTAAATCTC TACACATTCT TTCGCATGTG GGGATGTAGC TCAGTGGTAG
  AGCGCATGCT TAGCATGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8696512	WI_WGS_4_130079497	WI	MOUSE	f	SNP	C	T
ss321333972	CHEV_4_132071763	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6290620					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132243159 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	160 bp upstream
Rr377207	regulatory region 377207	within coordinates
Rr600995	regulatory region 600995	1059 bp distal
Rr600996	regulatory region 600996	558 bp distal
Rr600997	regulatory region 600997	897 bp distal
Rr600998	regulatory region 600998	within coordinates
Rr600999	regulatory region 600999	1926 bp proximal
Tssr39372	transcription start site region 39372	20 bp downstream
Tssr43681	transcription start site region 43681	414 bp upstream