rs6290619 SNP Detail

Summary

• ID
  rs6290619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132243156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGACA AGGCAACTCT
  CCGAAGCTGT TGAGGAGACC TGAAAGGTCT TTAAAATCTT CTTGCTCTGC CTATCAACCG
  GGCTCTGATT GGTCTAAAAC TCAGCGCCTG CCTCTCCTCC GCCCGCCCTG AGCAGGAAGG
  GAGCTGGTAG CACAAGGCTT ACTTTTTTTT TTTTTTTTCT TAATATTTGA GACTAGGTCT
  R
  TACACCAGGC CCATAACTCA AATCCGGAAC TCAAACTTGT TATGTATCCA GAGGCTGATC
  TTAACTTTAT GATGGCCCTG CCACAACTTC CCAAGTATCT GGGATTGCAA GTCTGTGTTG
  CCTCCCCTGG TGTTTTAAAT CTCTACACAT TCTTTCGCAT GTGGGGATGT AGCTCAGTGG
  TAGAGCGCAT GCTTAGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8696511	WI_WGS_4_130079494	WI	MOUSE	f	SNP	G	A
ss321333971	CHEV_4_132071760	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6290619					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132243156 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	163 bp upstream
Rr377207	regulatory region 377207	within coordinates
Rr600995	regulatory region 600995	1056 bp distal
Rr600996	regulatory region 600996	555 bp distal
Rr600997	regulatory region 600997	894 bp distal
Rr600998	regulatory region 600998	within coordinates
Rr600999	regulatory region 600999	1929 bp proximal
Tssr39372	transcription start site region 39372	17 bp downstream
Tssr43681	transcription start site region 43681	411 bp upstream