rs6290535 SNP Detail

Summary

• ID
  rs6290535
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155688990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTTCTTCTGA
  ATGTAGTTTA TAATTTGAGA GGGGCACGGT GACTTAATAC CTTTACGGTA GAGTGGCTGT
  TCTACACCAC AAGTTCAGGG TCAGCAGCTG TAACCAGCTT CAGGCCAATG TGGGTTAAAT
  AACCTACAAG ttcttttttt gtttgtttgn ttggttggtt ggttggttgg tttttcgaga
  cagggtttct ctgtgnagcn ctggctgtcc tggaactcan tttgtagacc aggctggcct
  S
  gaactcngaa atccgcctgc ctctgcctcc cgagtgctgg gattaaaggc gtgtgccacc
  anacccggcT CACCTACAAG TTCTTAAATG CAGGCAGCTT GTTGCTGCTG GTGGTCTTCA
  GCTTCTTGCA GGCTAAGACC TTCTTTTCTT TGTAATTGAT GCAAATTGTG GTCAGGGAAT
  TGGACCAGGA CTGGGTGGGT GAGTCAGACT CTGCCAGCAT TAGAGCTGAG TAGCCCTTGG
  TTCATCTATA                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8696426	WI_WGS_4_151056098	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6290535					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155688990 () rs orientation: forward

Symbol	Name	Function Class
Rr606519	regulatory region 606519	1405 bp distal
Rr606520	regulatory region 606520	470 bp distal
Slc35e2	solute carrier family 35, member E2	Intron