rs6290458 SNP Detail

Summary

• ID
  rs6290458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155688949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAGTTT ATAATTTGAG
  AGGGGCACGG TGACTTAATA CCTTTACGGT AGAGTGGCTG TTCTACACCA CAAGTTCAGG
  GTCAGCAGCT GTAACCAGCT TCAGGCCAAT GTGGGTTAAA TAACCTACAA GTTCTTTTTT
  TGTTTGTTTG TTTGGTTGGT TGGTTGGTTG GTTTTTCGAG ACAGGGTTTC TCTGTGTAGC
  Y
  CTGGCTGTCC TGGAACTCAT TTTGTAGACC AGGCTGGCCT CGAACTCAGA AATCCGCCTG
  CCTCTGCCTC CCGAGTGCTG GGATTAAAGG CGTGTGCCAC CAAACCCGGC TCACCTACAA
  GTTCTTAAAT GCAGGCAGCT TGTTGCTGCT GGTGGTCTTC AGCTTCTTGC AGGCTAAGAC
  CTTCTTTTCT TTGTAATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8696349	WI_WGS_4_151056057	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6290458					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155688949 () rs orientation: forward

Symbol	Name	Function Class
Rr606519	regulatory region 606519	1364 bp distal
Rr606520	regulatory region 606520	429 bp distal
Slc35e2	solute carrier family 35, member E2	Intron