rs6290453 SNP Detail

Summary

• ID
  rs6290453
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155688945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTTAGTAAGC
  CAGTGGAAAG GAAGTTATGA GTTAGTTTTT CATCTGTTCT TCTGAATGTA GTTTATAATT
  TGAGAGGGGC ACGGTGACTT AATACCTTTA CGGTAGAGTG GCTGTTCTAC ACCACAAGTT
  CAGGGTCAGC AGCTGTAACC AGCTTCAGGC CAATGTGGGT TAAATAACCT ACAAGttctt
  tttttgtttg tttgnttggt tggttggttg gttggttttt cgagacaggg tttctctgtg
  W
  agcnctggct gtcctggaac tcantttgta gaccaggctg gcctngaact cngaaatccg
  cctgcctctg cctcccgagt gctgggatta aaggcgtgtg ccaccanacc cggcTCACCT
  ACAAGTTCTT AAATGCAGGC AGCTTGTTGC TGCTGGTGGT CTTCAGCTTC TTGCAGGCTA
  AGACCTTCTT TTCTTTGTAA TTGATGCAAA TTGTGGTCAG GGAATTGGAC CAGGACTGGG
  TGGGTGAGTC                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8696344	WI_WGS_4_151056053	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6290453					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155688945 () rs orientation: forward

Symbol	Name	Function Class
Rr606519	regulatory region 606519	1360 bp distal
Rr606520	regulatory region 606520	425 bp distal
Slc35e2	solute carrier family 35, member E2	Intron