rs6290090 SNP Detail

Summary

• ID
  rs6290090
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56491060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTTGTT GTGGTGGTGG
  TGTTTTTTTG TTTGTTTGTT TATTTTGTTT TGTTTTGTTT TTTTGAGTAA GGTGAGATTC
  CCAAAACAAG TGGATACCCT AGGCTTGGGA TCCTGATAGA ATCATCTAAA GATCTGGAAG
  AACTGGGAGA AGGGTCAAGG CAGAATCAAT CAGCTCAATT TATAACATTG GAAACATTCA
  K
  CAAATATAAT GGACGACTAT GTCTTAAGAA TAAGTGTGTG CCCTGGGATA AAAGCCGTAG
  CCTGCGACTC AGGAAACAAG GGCGGATCTG TCCCAACAAG AATATAATCA AGGAGAATTA
  TAGATGTATA TCCATGATTT TAGTTATTTT CTAGAGCAAG TGGCAATGCC CTTTTAAGAA
  TGACAGTATT GAGTTGAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8695980	WI_WGS_13_55830109	WI	MOUSE	f	SNP							T		G
ss61809882	NES17750268	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		G		T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6290090					SNP	T	T	T	T	T	T	T	G	G	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809882	NES17750268	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56491060 () rs orientation: forward

Symbol	Name	Function Class
Gm24716	predicted gene, 24716	719 bp upstream
Rr480711	regulatory region 480711	330 bp distal
Rr480712	regulatory region 480712	1137 bp proximal