rs6289681 SNP Detail

Summary

• ID
  rs6289681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56491047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGAGGGAACT
  GTGGGAATTT AAGTGGAGTC ATTGTGGTCC TTGGCTGAGG GATGGGGACT GGGTTTTGTT
  GTTGTGGTGG TGGTGTTTTT TTGTTTGTTT Gtttattttg ttttgttttg ttttTTTGAG
  TAAGGTGAGA TTCCCAAAAC AAGTGGATAC CCTAGGCTTG GGATCCTGAT AGAATCATCT
  AAAGATCTGG AAGAACTGGG AGAAGGGTCA AGGCAGAATC AATCANCTCA ATTTATAACA
  Y
  TGGAAACATT CANCAAATAT AATGGACGAC TATGTCTTAA GAATAAGTGT GTGCCCTGGG
  ATAAAAGCCG TAGCCTGCGA CTCAGGAAAC AAGGGNGGAT CTGTCCCAAC AAGAATATAA
  TCAAGGAGAA TTATAGATGT ATATCCATGA TTTTAGTTAT TTTCTAGAGC AAGTGGCAAT
  GCCCTTTTAA GAATGACAGT ATTgagttga agagatggct cagtgtgaaa agcattggct
  gccctttcTG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8695567	WI_WGS_13_55830096	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6289681					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56491047 () rs orientation: forward

Symbol	Name	Function Class
Gm24716	predicted gene, 24716	706 bp upstream
Rr480711	regulatory region 480711	317 bp distal
Rr480712	regulatory region 480712	1150 bp proximal