rs6288015 SNP Detail

Summary

• ID
  rs6288015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62174397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATAGCC TGATTATGAG
  GCTTCTTTGT AAGTAAAGAT GTCTAGTGTG TCATCTTTGT TACTTTTCTA TCAAATCTCA
  GAAACATACA TTAAAACATG CAGATACAAA TACAACATGC CCCCTGCACA TGCAAGCTTG
  CTAGTTAAGT TGAAAGTAGC AAGTAAGAGT AAAACATACA CACACATAAA TCTTGCAAAG
  Y
  TGAAACTTTG AATTCATTGT GTTTTGATCA GATAGTTTCA GATTTCACTG TAGTAATGAT
  GACATCTTAC AAAAAAATGT ATATATACTG CTCAGAGGAA TATTACTCTT AGGATATTGT
  ATTCAGTCAC AACAGAGAAA ATTCTGTGTT GACATTATTC TTGTTTTTCT CTCTTTTTAA
  TTCATTCTCC TGCAGAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8693899	WI_WGS_2_63057746	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6288015					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62174397 () rs orientation: forward

Symbol	Name	Function Class
Dpp4	dipeptidylpeptidase 4	Intron
Rr557853	regulatory region 557853	1758 bp distal
Tssr507	transcription start site region 507	516 bp upstream
Tssr24253	transcription start site region 24253	400 bp upstream
Tssr24254	transcription start site region 24254	385 bp upstream
Tssr24255	transcription start site region 24255	352 bp upstream
Tssr24256	transcription start site region 24256	314 bp upstream
Tssr24257	transcription start site region 24257	222 bp upstream
Tssr24258	transcription start site region 24258	79 bp upstream